When using these files in studies, please cite the data following the DataCite standard. Thanks to Zenodo and Figshare for hosting the data.

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Gene / Protein ID mapping databases

Name: Ag_Derby_Ensembl_Metazoa_52.bridge
License: https://zenodo.org/record/7327722/files/LICENSE?download=1
Keywords: BridgeDb, mapping file, identifier, ELIXIR RIR, Anopheles gambiae, gene, protein, African malaria mosquito

JSON source

Species	BridgeDb Download	QC report	Size	License	Date	Tested with
Anopheles gambiae (ncbitaxon:7165)	Ag_Derby_Ensembl_Metazoa_52.bridge (doi:10.5281/zenodo.7327722)	QC	42.9 MB	license	2023-01-06	PathVisio 3.3 BridgeDb Webservice
Aspergillus niger (ncbitaxon:5061)	An_Derby_Ensembl_Fungi_52.bridge (doi:10.5281/zenodo.7781891)	QC	34.3 MB	license	2023-03-30	PathVisio 3.3 BridgeDb Webservice
Arabidopsis thaliana (ncbitaxon:3702)	At_Derby_Ensembl_Plant_52.bridge (doi:10.5281/zenodo.7781895)	QC	213.4 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Bacillus subtilis (ncbitaxon:1423)	Bs_Derby_Ensembl_91.bridge (doi:10.5281/zenodo.3667670)		8.2 MB	license	2020-02-14	BridgeDb Webservice
Bos taurus (ncbitaxon:9913)	Bt_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913)	QC	153.5 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Caenorhabditis elegans (ncbitaxon:6239)	Ce_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913)	QC	208.9 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Canis familiaris (ncbitaxon:9615)	Cf_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913)	QC	162.4 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Ciona intestinalis (ncbitaxon:7719)	Ci_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913)	QC	32.9 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Danio rerio (ncbitaxon:7955)	Dr_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913)	QC	272.0 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Daphnia magna (ncbitaxon:35525)	Da_Derby_Ensembl_Metazoa_52.bridge (doi:10.5281/zenodo.7327722)	QC	45.5 MB	license	2023-01-06	PathVisio 3.3 BridgeDb Webservice
Daphnia pulex (ncbitaxon:6669)	Dp_Derby_Ensembl_Metazoa_52.bridge (doi:10.5281/zenodo.7327722)	QC	60.8 MB	license	2023-01-06	PathVisio 3.3 BridgeDb Webservice
Drosophila melanogaster (ncbitaxon:7227)	Dm_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913)	QC	122.4 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Escherichia coli (ncbitaxon:562)	Ec_Derby_Ensembl_91.bridge (doi:10.5281/zenodo.3667670)		12.6 MB	license	2020-02-14
Equus caballus (ncbitaxon:9796)	Qc_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913)	QC	181.5 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Gallus gallus (ncbitaxon:9031)	Gg_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913)	QC	140.3 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Glycine max (ncbitaxon:3847)	Gm_Derby_Ensembl_Plant_52.bridge (doi:10.5281/zenodo.7781895)	QC	239.1 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Fusarium graminearum (ncbitaxon:5518)	Fg_Derby_Ensembl_Fungi_52.bridge (doi:10.5281/zenodo.7781891)	QC	20.9 MB	license	2023-03-30	PathVisio 3.3 BridgeDb Webservice
Homo sapiens (ncbitaxon:9606)	Hs_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913)	QC	839.3 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Hordeum vulgare (ncbitaxon:4513)	Hv_Derby_Ensembl_Plant_52.bridge (doi:10.5281/zenodo.7781895)	QC	66.8 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Macaca mulatta (ncbitaxon:9544)	Ml_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913)	QC	279.0 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Mus musculus (ncbitaxon:10090)	Mm_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913)	QC	478.2 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Mycobacterium tuberculosis (ncbitaxon:1773)	Mx_Derby_Ensembl_85.bridge (doi:10.5281/zenodo.5638771)		11.5 MB	license	2021-11-02
Ornithorhynchus anatinus (ncbitaxon:9258)	Oa_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913)	QC	98.6 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Oryza indica	Oi_Derby_Ensembl_Plant_52.bridge (doi:10.5281/zenodo.7781895)	QC	100.3 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Oryza japonica (ncbitaxon:39947)	Oj_Derby_Ensembl_Plant_52.bridge (doi:10.5281/zenodo.7781895)	QC	144.6 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Ovis aries (ncbitaxon:9940)	Ova_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913)	QC	98.1 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Pan troglodytes (ncbitaxon:9598)	Pt_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913)	QC	365.0 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Populus trichocarpa (ncbitaxon:3694)	Pi_Derby_Ensembl_Plant_52.bridge (doi:10.5281/zenodo.7781895)	QC	161.8 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Rattus norvegicus (ncbitaxon:10116)	Rn_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913)	QC	303.1 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Saccharomyces cerevisiae (ncbitaxon:4932)	Sc_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913)	QC	41.7 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Solanum lycopersicum (ncbitaxon:4081)	Sl_Derby_Ensembl_Plant_52.bridge (doi:10.5281/zenodo.7781895)	QC	106.5 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Sus scrofa (ncbitaxon:9823)	Ss_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913)	QC	183.2 MB	license	2023-03-11	PathVisio 3.3 BridgeDb Webservice
Vitis vinifera (ncbitaxon:29760)	Vv_Derby_Ensembl_Plant_52.bridge (doi:10.5281/zenodo.7781895)	QC	129.1 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Xenopus tropicalis (ncbitaxon:8364)	Xt_Derby_Ensembl_108.bridge (doi:10.5281/zenodo.7781913)	QC	118.5 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice
Zea mays (ncbitaxon:4577)	Zm_Derby_Ensembl_Plant_52.bridge (doi:10.5281/zenodo.7781895)	QC	192.8 MB	license	2023-03-31	PathVisio 3.3 BridgeDb Webservice

Coronavirus gene/protein identifiers

JSON source

Species	BridgeDb Download	QC report	Size	License	Date	Tested with
Human Coronaviruses	humancorona-2021-11-27.bridge (doi:10.5281/zenodo.5734440)		2.1 MB	CC0	2021-11-27	BridgeDb Webservice

Other ID mapping databases

JSON source

type	BridgeDb Download	QC report	Size	License	Date	Tested with
Complexes	complexes-2023-02-09.bridge (doi:10.5281/zenodo.7625357)		12.5 MB	CC0	2023-02-09	BridgeDb Webservice
Genes	genes_20230506.bridge (doi:10.5281/zenodo.7902769)		95.1 MB	CC0	2023-05-06	BridgeDb Webservice
Interactions	interactions20210109.bridge (doi:10.6084/m9.figshare.13551176)		17.13 MB	CC0	2021-01-09	BridgeDb Webservice
Metabolites	metabolites_20240903.bridge (doi:10.6084/m9.figshare.26931712.v1)	QC	2.84 GB	CC0	2024-09-03	PathVisio 3.3 BridgeDb Webservice
Pathways	pathways_20211211.bridge (doi:10.5281/zenodo.5773822)		2.4 MB	CC0	2021-12-11	BridgeDb Webservice
Publications	publications_20230428.bridge (doi:10.6084/m9.figshare.22720564.v1)	QC	25.7 MB	CC0	2023-04-28	BridgeDb Webservice